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Vaccine & Pathogen Immunology Knowledge Base

Precision Vaccines Program · Boston Children's Hospital

37 entries·32 vaccines·5 pathogens
Tier 1 · EPI/CoreVaccine

BCG

Live attenuated bacterial

Vaccine against tuberculosis and a key tool for neonatal immunization in endemic regions.

3 PubMed refs
trained immunitymetabolomicsneonatal
Tier 1 · EPI/CoreVaccine

Hepatitis B

Recombinant protein subunit

Vaccine that protects against hepatitis B virus infection and its long-term complications, including cirrhosis and liver cancer.

1 PubMed ref
anti-HBscorrelate of protectionmemory B cell
Tier 1 · EPI/CoreVaccine

mRNA-COVID-19

mRNA lipid nanoparticle

mRNA vaccine that protects against COVID-19 caused by SARS-CoV-2, including severe disease and hospitalization.

2 PubMed refs
mRNAspike proteinCOVID-19
Tier 1 · EPI/CoreVaccine

Yellow Fever (YF-17D)

Live attenuated viral

Live attenuated vaccine that protects against yellow fever, a viral hemorrhagic disease transmitted by mosquitoes in tropical regions.

2 PubMed refs
systems vaccinologyYEL-ANDYEL-AVD
Tier 1 · EPI/CoreVaccine

Influenza (IIV/LAIV)

Inactivated / Live attenuated

Annual vaccine that protects against seasonal influenza, recommended for all individuals 6 months and older.

Live literature
HAIOAShemagglutinin
Tier 1 · EPI/CoreVaccine

MMR

Live attenuated viral (trivalent)

Combined vaccine that protects against measles, mumps, and rubella — three highly contagious viral diseases.

Live literature
measlesmumpsrubella
Tier 1 · EPI/CoreVaccine

HPV (Gardasil-9)

Virus-like particle (VLP)

Vaccine that protects against nine human papillomavirus types responsible for cervical cancer and genital warts.

Live literature
VLPcervical cancer9-valent
Tier 1 · EPI/CoreVaccine

Pneumococcal (PCV15/PCV20)

Conjugate

Vaccine that protects against invasive pneumococcal disease, including pneumonia, meningitis, and bloodstream infections.

1 PubMed ref
OPAserotypeconjugate
Tier 1 · EPI/CoreVaccine

Rotavirus (Rotarix/RotaTeq)

Oral live attenuated

Oral vaccine that protects against rotavirus, the leading cause of severe diarrheal disease in infants and young children.

1 PubMed ref
mucosalIgAoral
Tier 1 · EPI/CoreVaccine

Tdap

Toxoid + acellular subunit

Combination vaccine that protects against tetanus, diphtheria, and whooping cough (pertussis), including maternal immunization for newborn protection.

Live literature
pertussismaternal vaccinationtoxoid
Tier 1 · EPI/CoreVaccine

Polio (IPV/OPV)

Inactivated / Oral live attenuated

Vaccine that protects against poliovirus, a crippling and potentially fatal infectious disease targeted for global eradication.

Live literature
poliomucosal immunityeradication
Tier 1 · EPI/CoreVaccine

Shingrix (RZV)

Adjuvanted recombinant subunit (AS01B)

Recombinant vaccine that prevents shingles (herpes zoster) and its complications in adults aged 50 and older.

Live literature
shinglesAS01BgE antigen
Tier 1 · EPI/CoreVaccine

Ebola (rVSV-ZEBOV)

Recombinant vesicular stomatitis virus

Licensed vaccine that protects against Ebola virus disease, used in outbreak response through ring vaccination strategy.

4 PubMed refs
Ebolaring vaccinationrVSV
Tier 1 · EPI/CoreVaccine

Malaria (R21/RTS,S)

Recombinant protein + adjuvant

Vaccine that protects against Plasmodium falciparum malaria, a leading cause of childhood mortality in sub-Saharan Africa.

1 PubMed ref
malariaCSPMatrix-M
Tier 1 · EPI/CoreVaccine

Varicella (VZV)

Live attenuated viral

Vaccine that protects against chickenpox (varicella), a highly contagious viral infection caused by varicella-zoster virus.

Live literature
chickenpoxVZVT cell
Tier 2 · ExtendedVaccine

Hepatitis A

Inactivated viral

Vaccine that protects against hepatitis A, a liver disease transmitted through contaminated food and water.

Live literature
anti-HAVseroconversiontravel
Tier 2 · ExtendedVaccine

Haemophilus influenzae b (Hib)

Conjugate

Vaccine that protects against Haemophilus influenzae type b, a cause of bacterial meningitis and pneumonia in young children.

Live literature
anti-PRPconjugatepediatric
Tier 2 · ExtendedVaccine

Meningococcal ACWY

Conjugate / Polysaccharide

Vaccine that protects against meningococcal disease caused by serogroups A, C, W, and Y, including meningitis and septicemia.

Live literature
SBAmeningococcalserum bactericidal
Tier 2 · ExtendedVaccine

Meningococcal B (MenB)

Recombinant multicomponent

Vaccine that protects against meningococcal serogroup B, a leading cause of bacterial meningitis in adolescents and young adults.

Live literature
hSBAstrain coverageMenB
Tier 2 · ExtendedVaccine

Dengue (Dengvaxia)

Live recombinant chimeric

Vaccine that protects against dengue fever, a mosquito-borne viral disease caused by four distinct serotypes, recommended only for seropositive individuals.

Live literature
ADEseropositivedengue
Tier 2 · ExtendedVaccine

Typhoid Conjugate (TCV)

Vi-polysaccharide conjugate

Conjugate vaccine that protects against typhoid fever, a systemic bacterial infection caused by Salmonella Typhi.

Live literature
Vi antigenconjugateT cell-dependent
Tier 2 · ExtendedVaccine

RSV (Adults/Maternal)

Prefusion F protein subunit / mRNA

Vaccine that protects older adults and newborns against respiratory syncytial virus (RSV), a leading cause of lower respiratory tract infections.

Live literature
RSVprefusion Fmaternal
Tier 2 · ExtendedVaccine

Rabies

Inactivated viral

Vaccine used for pre- and post-exposure prevention of rabies, a fatal viral neurological disease transmitted through animal bites.

Live literature
RVNApost-exposurememory response
Tier 2 · ExtendedVaccine

Japanese Encephalitis

Inactivated viral (Vero cell-derived)

Vaccine that protects against Japanese encephalitis, a mosquito-borne viral brain infection prevalent in Asia and the Western Pacific.

Live literature
PRNT50JEflavivirus
Tier 2 · ExtendedVaccine

Cholera (Oral)

Killed whole-cell oral

Oral vaccine that protects against cholera, a severe acute diarrheal disease caused by Vibrio cholerae, used in endemic and outbreak settings.

Live literature
mucosal IgAvibriocidaloral
Tier 2 · ExtendedVaccine

Mpox (JYNNEOS)

Modified vaccinia Ankara (MVA)

Vaccine that protects against mpox (monkeypox), a viral zoonotic disease related to smallpox, used in outbreak response and high-risk populations.

Live literature
MVA-BNmpoxsmallpox
Tier 2 · ExtendedVaccine

RSV (Nirsevimab/Pediatric)

Monoclonal antibody / mRNA (trial)

Monoclonal antibody and vaccine candidates that protect infants against respiratory syncytial virus (RSV), the most common cause of infant hospitalization.

Live literature
nirsevimabmonoclonalinfant
Tier 2 · ExtendedVaccine

HPV Bivalent (Cervarix)

VLP with AS04 adjuvant

Vaccine that protects against HPV types 16 and 18, the two strains responsible for the majority of cervical cancers.

Live literature
AS04cross-reactiveHPV16/18
Tier 3 · ExperimentalVaccine

HIV (Experimental)

Experimental (multiple platforms)

Experimental vaccine candidate against HIV, the virus that causes AIDS — no licensed product currently exists despite decades of research.

Live literature
RV144ALVACbroadly neutralizing
Tier 3 · ExperimentalVaccine

Tuberculosis (M72/AS01E)

Adjuvanted recombinant protein (AS01E)

Experimental vaccine candidate against tuberculosis, targeting adults with latent TB infection to prevent progression to active disease.

Live literature
M72TBlatent TB
Tier 3 · ExperimentalPathogen

Hantavirus (Experimental)

Pathogen — No Licensed Vaccine

Rodent-borne viral pathogen that causes hemorrhagic fever with renal syndrome (HFRS) and hantavirus pulmonary syndrome (HPS) — no licensed vaccine available.

2 PubMed refs
HFRSHPST cell pathogenesis
Tier 3 · ExperimentalPathogen

Marburg (Experimental)

Pathogen — No Licensed Vaccine

Highly lethal filovirus causing Marburg hemorrhagic fever — vaccine candidates are in early clinical trials with no licensed product.

Live literature
MarburgcAd3rVSV-MARV
Tier 3 · ExperimentalPathogen

Zika (Experimental)

Pathogen — No Licensed Vaccine

Mosquito-borne flavivirus linked to microcephaly and Guillain-Barré syndrome — vaccine candidates are in clinical trials with no licensed product.

Live literature
PRNT50dengue cross-immunitymRNA
Tier 3 · ExperimentalPathogen

Nipah (Experimental)

Pathogen — No Licensed Vaccine

Bat-borne paramyxovirus with a case fatality rate of 40–75%, classified as a WHO priority pathogen — vaccine candidates are in early trials.

Live literature
mRNA-1215G glycoproteinCFR 40-75%
Tier 3 · ExperimentalPathogen

Lassa Fever (Experimental)

Pathogen — No Licensed Vaccine

Rodent-borne arenavirus causing Lassa fever, endemic in West Africa — vaccine candidates are in Phase 2 trials with no licensed product.

Live literature
MV-LASVT cellNHP model
Tier 3 · ExperimentalVaccine

Staphylococcus aureus (Failed)

Experimental — No Licensed Product

Common bacterial pathogen causing skin, bloodstream, and surgical site infections — multiple vaccine candidates have failed Phase 3 trials.

Live literature
Phase 3 failureantibody insufficientT cell gap
Tier 3 · ExperimentalVaccine

Norovirus (Experimental)

Virus-like particle (VLP)

Leading cause of acute gastroenteritis worldwide — virus-like particle vaccine candidates are in late-stage clinical trials.

Live literature
VLPmucosal IgAserum IgG

VaxIQ AI Assistant

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Ask questions about vaccine mechanisms, correlates of protection, metabolic signatures, and clinical implications.

What is the correlate of protection for Hepatitis B?
Anti-HBs ≥10 mIU/mL is the established correlate of protection for hepatitis B vaccination. Memory B cells persist even when antibody titers wane below protective levels, enabling anamnestic responses upon re-exposure.
How does BCG reprogram innate immunity?
BCG induces trained immunity through epigenetic reprogramming of bone marrow progenitors and circulating monocytes, driven by metabolic rewiring including increased glycolysis and glutaminolysis. Neonatal BCG vaccination shifts lipid metabolism toward pro-inflammatory mediators detectable in plasma metabolomics.

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