External Tools & Resources

A sustainable, publicly accessible archive of immunology data generated by NIAID/DAIT investigators.

The Immune Epitope Database: curated B-cell and T-cell epitope data and prediction tools.

Database of Immune Cell Expression, expression quantitative trait loci, and epigenomics.

Molecular Signatures Database, including blood transcription modules widely used in systems vaccinology.

Systems-immunology datasets and analysis tools from the Human Immunology Project Consortium (HIPC).

Gene Expression Omnibus: a public functional genomics data repository and ImmuneVISTA deposition target.

A genome browser for vertebrate genomes supporting comparative genomics, variation, and regulation.

Comprehensive, high-quality protein sequence and functional annotation resource.

A repository and analysis platform for metabolomics data, protocols, and reference standards.

The Human Metabolome Database: detailed chemical, clinical, and biochemical metabolite data.

Tissue-specific gene expression and regulation reference across the human body.

A database for understanding high-level functions and pathways from large-scale molecular datasets.

An open-source, manually curated and peer-reviewed pathway database.

Standardized, structured annotation of gene and gene-product function across species.

Protein–protein interaction networks with functional enrichment analysis.

Gene-set enrichment analysis across an extensive collection of annotated libraries.

Functional enrichment analysis and gene identifier conversion.

R/Bioconductor packages for genomic, transcriptomic, and multi-omic data analysis.

A project of the SBGrid Consortium that simplifies installing and managing life-sciences software.

Statistical, functional, and pathway analysis tailored to metabolomics data.

Community-curated, portable, and reproducible bioinformatics pipelines.

A secure web application for online and offline research data capture.

Standardized proteomics data deposition and a public repository of mass-spectrometry data.

Registry and results database of publicly and privately supported clinical studies.

A curated registry of data standards, databases, and policies supporting FAIR data.